# Makefile for 
# Copyright (C) 2012 Massimo Marchi <Massimo.Marchi@cea.fr>
# $Header$
# $Log$
# what flags you want to pass to the C compiler & linker
AM_CXXFLAGS = -g0 -std=c++0x -I../alglib
AM_LDFLAGS = -L../alglib -lalg

# this lists the binaries to produce, the (non-PHONY, binary) targets in
# the previous manual Makefile
bin_PROGRAMS = trjSelf
trjSelf_SOURCES = Array.h AtomIndex.cpp AtomIndex.h AtomIndex.o Atoms.cpp Atoms.h \
	Atoms.o Communicator.hpp FAtoms.cpp FAtoms.h FAtoms.o FComms.cpp FComms.h FComms.o\
	FstreamC.cpp FstreamC.h FstreamC.o \
	Fstream.cpp FstreamF.cpp FstreamF.h FstreamF.o Fstream.h Fstream.o zs \
	gmxfi.h gmxfio.h HeaderTrj.cpp HeaderTrj.h\
	HeaderTrj.o Help.hpp Metric.cpp Metric.h Metric.o\
	MyMPI.cpp MyMPI.h MyMPI.o MyMPI_Spec.hpp MyUtilClass.cpp MyUtilClass.h\
	ResidueCM.cpp ResidueCM.h ResidueCM.o ResidueTypes.cpp ResidueTypes.h \
	ResidueTypes.o Topol.cpp Topol.h Topol.o trjInput.cpp trjInput.h trjInput.o\
	trjSelf trjSelf.cpp trjSelf.o Groups.cpp Groups.h \
	Groups.o MAtoms.cpp MAtoms.h MAtoms.o Gyration.cpp Gyration.h Gyration.o\
	Gridn.cpp Gridn.h Gridn_SpecTemplates.hp Gridn.o Rho.cpp Rho.h Rho.o\
	Grid.cpp Grid.h Grid_SpecTemplates.hp Grid.o\
	DiffCoeffs_Spec.hpp DiffCoeffs.cpp DiffCoeffs.h DiffCoeffs.o fftw++.cpp \
	fftw++.h  fftw++.o RhoStat.cpp RhoStat.h RhoStat.o histograms.hpp \
	TopolMic.cpp TopolMic.h TopolMic.o Myradius.cpp Myradius.h Myradius.o\
	RadiiDBase.cpp RadiiDBase.h RadiiDBase.o TopolPDB.cpp TopolPDB.h TopolPDB.o\
	InputRadii.cpp InputRadii.h InputRadii.o Dipoles.cpp Dipoles.h Dipoles.o\
	Parameters.cpp Parameters.h Parameters.o Percolation.cpp Percolation.h \
	Percolation.o LCells.cpp LCells.h LCells.o CenterMass.cpp CenterMass.h \
	CenterMass.o CenterMassBW.cpp CenterMassBW.h CenterMassBW.o \
	CenterMassBW2.cpp CenterMassBW2.h CenterMassBW2.o \
	CenterMassBW3.cpp CenterMassBW3.h CenterMassBW3.o 
	

